I have an odd issue with wine-ran applications. When I run them they don’t show up on the kicker panel at the bottom of the screen where all the other ‘running’ programs are - they do show up on alt-tab as normal, but not on kicker.
You mean they are not showing up in the taskbar.
Can you also confirm this with another taskbar plugin besides icontasks ?
(you can right click and add another taskbar widget in the panel configuration)
That is weird. I just tried on my Netrunner 14 install and wine applications are showing up just fine in my task managers. You might try setting up a new user and installing some wine apps there as well, just to see if this might be an localized issue within your home directory causing this.